Bioinformatics Infrastructure to Support Glycomics Research

Bioinformatics Databases

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Bioinformatics Ontologies

• Upper Ontologies
  • Basic Formal Ontology (BFO)
  • Suggested Upper Merged Ontology (SUMO)
• Domain Ontologies
  • Glycomics Ontology (GlycO)
  • Sequence Ontology (SO)
  • Gene Ontology (GO)
  • OBO Foundary
• Ontology Engineering
  • Beyond Concepts: Ontology as Reality Representation

Data and Knowledge Integration in Bioinformatics

• ARIA2: Automated NOE assignment and data integration in NMR structure calculation
• Bioinformatics Visualization and Integration with Open Standards
• Biomolecular Interaction Network Database
• Data merging for integrated microarray and proteomic analysis
• Evolving research trends in bioinformatics
• Inferring gene ontology category membership via cross-experiment gene expression data analysis
• Recent trends in knowledge and data integration for the life sciences
• Software agents in molecular computational biology
• Knowledge guided analysis of gene expression data using genetic programming, support vector machines and the gene ontlogy and PIR databases
• Technologies for integrating biological data
• The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere
• Ontologies and Semantic Data Integration

User, Program and Application Access

• Web Clients
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• Web Services
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Infrastructure Supporting Systems Biology

• Towards a Modeling Infrastructure for Studying Plant Cells
• Pathway Information for Systems Biology
• System Biology for the Virtual Plant