scalation.analytics.par

ANCOVA

Related Doc: package par

class ANCOVA extends Predictor with Error

The ANCOVA class supports ANalysis of COVAraiance (ANCOVA). It allows the addition of a categorical treatment variable 't' into a multiple linear regression. This is done by introducing dummy variables 'dj' to distinguish the treatment level. The problem is again to fit the parameter vector 'b' in the augmented regression equation

y = b dot x + e = b0 + b_1 * x_1 + b_2 * x_2 + ... b_k * x_k + b_k+1 * d_1 + b_k+2 * d_2 + ... b_k+l * d_l + e

where 'e' represents the residuals (the part not explained by the model). Use Least-Squares (minimizing the residuals) to fit the parameter vector

b = x_pinv * y

where 'x_pinv' is the pseudo-inverse.

See also

see.stanford.edu/materials/lsoeldsee263/05-ls.pdf

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Instance Constructors

  1. new ANCOVA(x_: MatrixD, t: VectorI, y: VectorD, levels: Int, technique: RegTechnique = Fac_QR)

    x_

    the data/design matrix of continuous variables

    t

    the treatment/categorical variable vector

    y

    the response vector

    levels

    the number of treatment levels (1, ... levels)

    technique

    the technique used to solve for b in x.t*x*b = x.t*y

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def assignDummyVars(): Unit

    Assign values for the dummy variables based on the treatment vector 't'.

  6. def assignVars(): Unit

    Assign values for the continuous variables from the 'x' matrix.

  7. def backElim(): (Int, VectorD, Double, Double)

    Perform backward elimination to remove the least predictive variable from the model, returning the variable to eliminate, the new parameter vector, the new R-squared value and the new F statistic.

  8. def clone(): AnyRef

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    @throws( ... )
  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )
  12. def fit: (VectorD, Double, Double, Double)

    Return the fit (parameter vector b, quality of fit rSquared).

  13. def flaw(method: String, message: String): Unit

    Show the flaw by printing the error message.

    Show the flaw by printing the error message.

    method

    the method where the error occurred

    message

    the error message

    Definition Classes
    Error
  14. final def getClass(): Class[_]

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  15. def hashCode(): Int

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  16. final def isInstanceOf[T0]: Boolean

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  17. final def ne(arg0: AnyRef): Boolean

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  18. final def notify(): Unit

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  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  20. def predict(z: Matrix): VectorD

    Predict the value of y = f(z) by evaluating the formula y = b dot zi for each row zi of matrix z.

    Predict the value of y = f(z) by evaluating the formula y = b dot zi for each row zi of matrix z.

    z

    the new matrix to predict

    Definition Classes
    ANCOVAPredictor
  21. def predict(z: VectorD): Double

    Predict the value of y = f(z) by evaluating the formula y = b dot z, e.g., (b0, b1, b2) dot (1, z1, z2).

    Predict the value of y = f(z) by evaluating the formula y = b dot z, e.g., (b0, b1, b2) dot (1, z1, z2).

    z

    the new vector to predict

    Definition Classes
    ANCOVAPredictor
  22. def predict(z: VectorI): Double

    Given a new discrete data vector z, predict the y-value of f(z).

    Given a new discrete data vector z, predict the y-value of f(z).

    z

    the vector to use for prediction

    Definition Classes
    Predictor
  23. val rg: Regression

  24. final def synchronized[T0](arg0: ⇒ T0): T0

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    AnyRef
  25. def toString(): String

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    AnyRef → Any
  26. def train(yy: VectorD): Unit

    Retrain the predictor by fitting the parameter vector (b-vector) in the multiple regression equation yy = b dot x + e = [b_0, ...

    Retrain the predictor by fitting the parameter vector (b-vector) in the multiple regression equation yy = b dot x + e = [b_0, ... b_k+l] dot [1, x_1, ..., d_1, ...] + e using the least squares method.

    yy

    the new response vector

  27. def train(): Unit

    Train the predictor by fitting the parameter vector (b-vector) in the regression equation y = b dot x + e = [b_0, ...

    Train the predictor by fitting the parameter vector (b-vector) in the regression equation y = b dot x + e = [b_0, ... b_k+l] dot [1, x_1, ..., d_1, ...] + e using the least squares method.

    Definition Classes
    ANCOVAPredictor
  28. def vif: VectorD

    Compute the Variance Inflation Factor (VIF) for each variable to test for multi-colinearity by regressing xj against the rest of the variables.

    Compute the Variance Inflation Factor (VIF) for each variable to test for multi-colinearity by regressing xj against the rest of the variables. A VIF over 10 indicates that over 90% of the varaince of xj can be predicted from the other variables, so xj is a candidate for removal from the model.

  29. final def wait(): Unit

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    @throws( ... )
  30. final def wait(arg0: Long, arg1: Int): Unit

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  31. final def wait(arg0: Long): Unit

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  32. val x: MatrixD

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