Description
| BSML
| Bioinformatic Sequence Markup Language
| LabBook
| www.bsml.org
| DTD
| www.labbook.com/dtd/bsml2_2_annot.dtd
| The Bioinformatic Sequence Markup Language is an open-standard
protocol for the encoding and display of graphic genomic displays of
DNA, RNA, and protein sequence information.
|
| BIOML
| BIOpolymer Markup Language
| ProteoMetrics
| www.bioml.com
| DTD
| www.bioml.com/BIOML/bioml.dtd
| The BIOpolymer Markup Language (BIOML) is an XML language that is
used to describe experimental information about proteins, genes, and
other biopolymers.
|
| PSDML
| Protein Sequence Database Markup Language
| National Biomedical Research Foundation
| pir.georgetown.edu/pirwww
| DTD
| pir.georgetown.edu/pirwww/xml/psdml.dtd
| The Protein Sequence Database Markup Language is an open-standard
markup language used to store protein information in the Protein
Information Resource (PIR) database.
|
| AGAVE
| Architecture for Genomic Annotation, Visualization and Exchange
| DoubleTwist
| www.agavexml.org
| XML Schema
| www.agavexml.org/schema/v3_0/agave.xsd
| An Architecture for Genomic Annotation, Visualization and Exchange from the AGAVE Community lead by DuobleTwist.
|
| MSAML
| Multiple Sequence Alignment Markup Language
| Paul Gordon
| maggie.cbr.nrc.ca/~gordonp/xml/MSAML
| DTD
| maggie.cbr.nrc.ca/~gordonp/xml/MSAML/dtd/msaml.dtd
| The Multiple Sequence Alignments Markup Language was developed to make manipulation
and extraction of multiple sequence alignment information easier by logically defining
the parts of an alignment for use in an XML-based application.
|
| GAME
| Genome Annotation Markup Elements
| BIOXML
| www.bioxml.org/Projects/game
| DTD
| www.bioxml.org/dtds/game2/game.dtd
| Genome Annotation Markup Elements is a markup language used in
molecular biology for annotation of a biosequence.
|
| MGED-ML
| Microarray Gene Expression Database Markup Language
| MGED Group/OMG
| www.mged.org
| DTD
| ftp.omg.org/pub/docs/lifesci/01-11-02.dtd
| The Microarray Gene Expression Database (MGED) group is a grass-root movement
to promote the adoption of standards in microarray experiments and data.
More specific goals are to facilitate the establishment of gene expression databases,
comparability of microarray data from different sources, interoperability of different
functional genomics databases and data analysis software.
Subsumes GeneXML, GEML and MAML.
|