Packages

class SSA extends Error

The SSA class implements the Gillespie Stochastic Simulation Algorithm 'SSA'.

Linear Supertypes
Error, AnyRef, Any
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Inherited
  1. SSA
  2. Error
  3. AnyRef
  4. Any
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Visibility
  1. Public
  2. Protected

Instance Constructors

  1. new SSA(c: MatrixI, r: MatrixI, z: MatrixI, x: MatrixD, t0: Double = 0.0)

    c

    the matrix giving sub-volume connectivity

    r

    the matrix indicating which the reactions that are active in each sub-volume

    z

    the matrix giving stoichiometry for all reactions

    x

    the matrix giving species population per volume

    t0

    the start time for the simulation

Value Members

  1. val L: Int
  2. val R: Int
  3. val S: Int
  4. val a: Array[VectorD]
  5. val cut: (Double, Double, Double)
  6. val e: IndexedSeq[Int]
  7. final def flaw(method: String, message: String): Unit
    Definition Classes
    Error
  8. def simulate(tf: Double): Unit

  9. var t: Double
  10. def toString(): String

    Definition Classes
    SSA → AnyRef → Any