class SSA extends Error
The SSA
class implements the Gillespie Stochastic Simulation Algorithm 'SSA'.
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Instance Constructors
- new SSA(c: MatrixI, r: MatrixI, z: MatrixI, x: MatrixD, t0: Double = 0.0)
- c
the matrix giving sub-volume connectivity
- r
the matrix indicating which the reactions that are active in each sub-volume
- z
the matrix giving stoichiometry for all reactions
- x
the matrix giving species population per volume
- t0
the start time for the simulation
Value Members
- final def !=(arg0: Any): Boolean
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- AnyRef → Any
- final def ##: Int
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- final def ==(arg0: Any): Boolean
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- val L: Int
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- val S: Int
- val a: Array[VectorD]
- final def asInstanceOf[T0]: T0
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- def clone(): AnyRef
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- protected[lang]
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- @throws(classOf[java.lang.CloneNotSupportedException]) @native() @HotSpotIntrinsicCandidate()
- val cut: (Double, Double, Double)
- val e: IndexedSeq[Int]
- final def eq(arg0: AnyRef): Boolean
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- def equals(arg0: AnyRef): Boolean
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- final def flaw(method: String, message: String): Unit
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- final def notifyAll(): Unit
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- @native() @HotSpotIntrinsicCandidate()
- def simulate(tf: Double): Unit
- final def synchronized[T0](arg0: => T0): T0
- Definition Classes
- AnyRef
- var t: Double
- def toString(): String
- Definition Classes
- SSA → AnyRef → Any
- final def wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws(classOf[java.lang.InterruptedException])
- final def wait(arg0: Long): Unit
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- @throws(classOf[java.lang.InterruptedException]) @native()
- final def wait(): Unit
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Deprecated Value Members
- def finalize(): Unit
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- @throws(classOf[java.lang.Throwable]) @Deprecated
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Inherited from Error
Value Members
- final def flaw(method: String, message: String): Unit
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Inherited from AnyRef
Value Members
- final def !=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- final def ##: Int
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- AnyRef → Any
- final def ==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- def clone(): AnyRef
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- protected[lang]
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- @throws(classOf[java.lang.CloneNotSupportedException]) @native() @HotSpotIntrinsicCandidate()
- final def eq(arg0: AnyRef): Boolean
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- def equals(arg0: AnyRef): Boolean
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- final def getClass(): Class[_ <: AnyRef]
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- def hashCode(): Int
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- final def ne(arg0: AnyRef): Boolean
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- final def notify(): Unit
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- final def notifyAll(): Unit
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- @native() @HotSpotIntrinsicCandidate()
- final def synchronized[T0](arg0: => T0): T0
- Definition Classes
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- final def wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws(classOf[java.lang.InterruptedException])
- final def wait(arg0: Long): Unit
- Definition Classes
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- @throws(classOf[java.lang.InterruptedException]) @native()
- final def wait(): Unit
- Definition Classes
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- @throws(classOf[java.lang.InterruptedException])
- def finalize(): Unit
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Ungrouped
- final def !=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- final def ##: Int
- Definition Classes
- AnyRef → Any
- final def ==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- val L: Int
- val R: Int
- val S: Int
- val a: Array[VectorD]
- final def asInstanceOf[T0]: T0
- Definition Classes
- Any
- def clone(): AnyRef
- Attributes
- protected[lang]
- Definition Classes
- AnyRef
- Annotations
- @throws(classOf[java.lang.CloneNotSupportedException]) @native() @HotSpotIntrinsicCandidate()
- val cut: (Double, Double, Double)
- val e: IndexedSeq[Int]
- final def eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
- def equals(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef → Any
- final def flaw(method: String, message: String): Unit
- Definition Classes
- Error
- final def getClass(): Class[_ <: AnyRef]
- Definition Classes
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- Annotations
- @native() @HotSpotIntrinsicCandidate()
- def hashCode(): Int
- Definition Classes
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- Annotations
- @native() @HotSpotIntrinsicCandidate()
- final def isInstanceOf[T0]: Boolean
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- final def ne(arg0: AnyRef): Boolean
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- final def notify(): Unit
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- @native() @HotSpotIntrinsicCandidate()
- final def notifyAll(): Unit
- Definition Classes
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- @native() @HotSpotIntrinsicCandidate()
- def simulate(tf: Double): Unit
- final def synchronized[T0](arg0: => T0): T0
- Definition Classes
- AnyRef
- var t: Double
- def toString(): String
- Definition Classes
- SSA → AnyRef → Any
- final def wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws(classOf[java.lang.InterruptedException])
- final def wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws(classOf[java.lang.InterruptedException]) @native()
- final def wait(): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws(classOf[java.lang.InterruptedException])
- def finalize(): Unit
- Attributes
- protected[lang]
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- @throws(classOf[java.lang.Throwable]) @Deprecated
- Deprecated